Publications supported by UCBREP GREAT Training Grants
Sorted by Grant Number

• Grant 2004-33 – Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M., et al.; Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes; Genome Research, , (2005). submitted
   
• Grant 2004-33 – Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Bejerano G, Siepel AC, Kent WJ, Haussler D; Computational screening of conserved genomic DNA in search of functional noncoding elements; Nat Methods, 2(7):535-45, (2005).
   
• Grant 2004-33 – Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Siepel, A. and Haussler, D.; Phylogenetic hidden Markov models; Statistical Methods in Molecular Evolution, Springer, (2005). Book Chapter
   
• Grant 2004-33 – Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  International Chicken Genome Sequencing Consortium; Sequencing and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution; Nature, 432:695-716, (2004).
   
• Grant 2004-33 – Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  ENCODE Project Consortium; The ENCODE (ENCyclopedia Of DNA Elements) Project; Science, 306:636-640, (2004).
   
• Grant 2004-30 – Dielectric Labeling and Dielectrophoretic Manipulation of Cells, Primary Sponsor: Hyongsok (Tom) Soh, Trainee: Jiangrong Qian
  Qian J, Soh T; Marker Specific Sorting of Rare Cells Using Dielectrophoresis; Proc. Nat. Acad. Sci., , (2005). in preparation
   
• Grant 2004-30 – Dielectric Labeling and Dielectrophoretic Manipulation of Cells, Primary Sponsor: Hyongsok (Tom) Soh, Trainee: Jiangrong Qian
  Qian J, Soh T; Modeling, Design and Fabrication of Dielectrophoretically Activated Cell Sorter; Applied Physics Letters, , (2005). in preparation
   
• Grant 2004-29 – Nucleoprotein and nanoparticle-based molecular electronics, Primary Sponsor: Norbert Reich, Trainee: August Estabrook
  Wilkinson S, Estabrook RA, Holstein T, Braun G, Reich N; Construction of large 4-way immobile DNA junctions; , , (2005). in preparation
   
• Grant 2004-29 – Nucleoprotein and nanoparticle-based molecular electronics, Primary Sponsor: Norbert Reich, Trainee: August Estabrook
  Braun G, Inagaki K, Estabrook RA, Wood DK, Levy E, Strouse GF, Cleland AN, Reich NO; Gold Nano-particle Decoration of DNA on Silicon; Small, , (2005). submitted
   
• Grant 2004-29 – Nucleoprotein and nanoparticle-based molecular electronics, Primary Sponsor: Norbert Reich, Trainee: August Estabrook
  Estabrook RA, Luo J, Purdy MM, Sharma V, Weakliem P, Bruice TC, Reich NO; Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis; Proc Natl Acad Sci USA, 102(4):994-9, (2005).
   
• Grant 2004-27 – Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral delivery of macromolecules using intestinal patches: applications for insulin delivery; J Control Release, 98(1):37-45, (2004).
   
• Grant 2004-27 – Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery; American Institute of Chemical Engineers Annual meeting, , (2004). Presentation
   
• Grant 2004-27 – Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral Insulin Delivery Using Intestinal Patches; Diabetes Technology Society Meeting, , (2004). Presentation
   
• Grant 2004-27 – Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral Delivery of Macromolecules Using Intestinal Patches: Applications to Insulin Delivery; Proceedings of the Controlled Release Society, , (2004). Presentation
   
• Grant 2004-27 – Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Mitragotri S; Oral Delivery of Macromolecules; Drug Delivery Companies Report, PharmaVentures, (2004).
   
• Grant 2004-16 – Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  AA Chen, AM Derfus, SR Khetani, and SN Bhatia; Quantum Dots to Monitor RNAi Delivery and Improve Gene Silencing; Nucleic Acids Research, , (2005). submitted
   
• Grant 2004-16 – Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  AM Derfus, G von Maltzahn, TJ Harris, T Duza, KS Vecchio, E Ruoslahti, and SN Bhatia; Remotely Triggered Release from Magnetic Nanoparticles; , , (2005). in preparation
   
• Grant 2004-14 – Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming Wu, Trainee: Pei-Yu (Eric) Chiou
  P. Y. Chiou, Aaron T. Ohta, Ming C. Wu; Massively parallel optical manipulation of single cells and microparticles using optical images; Nature, , (2005). accepted
   
• Grant 2004-14 – Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming Wu, Trainee: Pei-Yu (Eric) Chiou
  P. Y. Chiou, Aaron T. Ohta, Ming C. Wu; Microvision activated optical manipulation on microscopic particles; Proceedings IEEE Seventeenth Annual International Conference on Micro Electro Mechanical Systems, (MEMS '05), (2005). in press
   
• Grant 2004-14 – Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming Wu, Trainee: Pei-Yu (Eric) Chiou
  P. Y. Chiou, Aaron T. Ohta, M. C. Wu; Toward all optical lab-on-a-chip system: optical manipulation of both microfluid and microscopic particles; Proceedings of Spie - the International Society for Optical Engineering, AM266, (2004).